ZFIN ID: ZDB-GENE-040426-1866
Gene Name: ADP-ribosylation factor-like 5C
Gene Symbol: arl5c    Nomenclature History

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Previous Name: zgc:77751

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have GTP binding activity. Predicted to be involved in intracellular protein transport; protein localization to Golgi membrane; and vesicle-mediated transport. Predicted to localize to the trans-Golgi network. Is expressed in several structures, including basal plate midbrain region; midbrain; presumptive diencephalon; segmental plate; and thymus. Orthologous to human ARL5C (ADP ribosylation factor like GTPase 5C).
Genome Resources: Alliance (1),  Gene:393819 (1),  Ensembl(GRCz11):ENSDARG00000035719 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la023919Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH arl5c HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH arl5c VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process intracellular protein transport (more)
    Cellular Component cytoplasm (more)
    Molecular Function GTP binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR005225 Small GTP-binding protein domain
    Family IPR006689 Small GTPase superfamily, ARF/SAR type
    Homologous_superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA arl5c-201 (1)    Ensembl 1457
    ncRNA arl5c-002 (1)    Ensembl 826
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM arl5c No data available
    MARKER RELATIONSHIPS
    arl5c Contained in: [BAC] DKEY-81L17 (1) (order this)
    arl5c Encodes: [EST] IMAGE:7163344 (1)
    [cDNA] MGC:77751 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_200846 (1) 1311 nt
    Genomic GenBank:CR387933 (1) 182618 nt
    Select Tool
    Polypeptide UniProtKB:Q6P6E8 (1) 179 aa
    Sequence Information (all 9)
    ORTHOLOGY for arl5c ( Chr: 3 )
    CITATIONS (22)