ZFIN ID: ZDB-GENE-040426-1832
Gene Name: sorting nexin 16
Gene Symbol: snx16    Nomenclature History

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Previous Name: zgc:77396

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 24 Mapping Details/Browsers
Description: Predicted to have phosphatidylinositol binding activity. Predicted to be involved in early endosome to late endosome transport; endosome to lysosome transport; and protein targeting to lysosome. Predicted to localize to early endosome; extrinsic component of endosome membrane; and late endosome. Orthologous to human SNX16 (sorting nexin 16).
Genome Resources: Alliance (1),  Gene:402964 (1),  Ensembl(GRCz11):ENSDARG00000046072 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:77396]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH snx16 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH snx16 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process early endosome to late endosome transport (more)
Cellular Component early endosome (more)
Molecular Function phosphatidylinositol binding (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS No data available
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM snx16 No data available
MARKER RELATIONSHIPS
snx16 Encodes: [cDNA] MGC:77396 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_205665 (1)
Genomic GenBank:CABZ01084744 (1) 4464 nt
Polypeptide UniProtKB:F1R052 (1) 294 aa
Sequence Information (all 12)
ORTHOLOGY for snx16 ( Chr: 24 )
CITATIONS (16)