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ZIRC
ZFIN ID: ZDB-GENE-040426-1828
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Gene Name: plexin D1
Gene Symbol: plxnd1
Sequence Ontology ID : SO:0000704

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Previous Names: obd, out of bounds, zgc:77379

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have semaphorin receptor activity. Involved in blood vessel morphogenesis and embryonic eye morphogenesis. Predicted to localize to the integral component of membrane. Orthologous to  ...
GENE EXPRESSION
All Expression Data: 11 figures from 7 publications
Wild-type Stages, Structures: Segmentation:5-9 somites (11.66h-14.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
fov01b Point Mutation Unknown Premature Stop
  • Zebrafish International Resource Center (ZIRC) (order this)
    • fs31l Deficiency Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
    • fv109k Unknown Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
    • plxnd1_unspecified Unspecified Unknown Unknown
    s601 Unknown Unknown Unknown ENU
    um7 Unknown Unknown Unknown ENU
    Targeting reagents:
    PHENOTYPE
    Data: 20 figures from 9 publications
    Observed in:
    DISEASE ASSOCIATED WITH plxnd1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH plxnd1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process sprouting angiogenesis (more)
    Cellular Component integral component of membrane (more)
    Molecular Function semaphorin receptor activity (more)
    GO Terms (all 18)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001627 (1)
  • InterPro:IPR002165 (1)
  • InterPro:IPR002909 (1)
  • InterPro:IPR008936 (1)
  • InterPro:IPR013548 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR014756 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR016201 (1)
  • InterPro:IPR031148 (1)
  • InterPro:IPR036352 (1)
  • InterPro:IPR041019 (1)
    		•
  • PROSITE:PS51004 (1)
    		•
  • Pfam:PF01403 (1)
  • Pfam:PF01437 (1)
  • Pfam:PF01833 (1)
  • Pfam:PF08337 (1)
  • Pfam:PF17960 (1)
    		•
    TRANSCRIPTS No data available
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM plxnd1 No data available
    MARKER RELATIONSHIPS
    plxnd1Encodes: [cDNA] MGC:77379 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_205697 (1) 6474bp
    Select Tool
    Genomic GenBank:CABZ01112317 (1) 5221bp
    Select Tool
    Polypeptide UniProtKB:Q6DSU3 (1) 1880aa
    Select Tool
    Sequence Clusters UniGene:103153 (1)
    Sequence Information (all 21)
    OTHER plxnd1 GENE PAGES
  • Alliance (1)
  • Gene:402998 (1)
  • Ensembl(GRCz11):ENSDARG00000086057 (2)
    • ORTHOLOGY for plxnd1 (Chr: 8)
    CITATIONS (47)