ZFIN ID: ZDB-GENE-040426-1702
Gene Name: exosome component 4
Gene Symbol: exosc4
Sequence Ontology ID : SO:0000704

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Previous Names: exosome complex exonuclease RRP41 (1), zgc:73175

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(Including Attributions)
Location: Chr: 2 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 7 figures from 2 publications
Directly Submitted Expression Data: 6 figures (15 images) from Thisse et al., 2004 [MGC:73175]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi340bTg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH exosc4 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH exosc4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process nuclear mRNA surveillance (more)
    Cellular Component cytoplasmic exosome (RNase complex) (more)
    Molecular Function exonuclease activity (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001247 (1)
  • InterPro:IPR015847 (1)
  • InterPro:IPR020568 (1)
  • InterPro:IPR027408 (1)
  • InterPro:IPR036345 (1)
  • Pfam:PF01138 (1)
  • Pfam:PF03725 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA exosc4-001 (1) 782
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM exosc4 No data available
    MARKER RELATIONSHIPS
    exosc4Contained in: [Fosmid] ZFOS-2284C12 (1)
    exosc4Encodes: [cDNA] MGC:73175 (1) (order this), MGC:174480 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200739 (1) 1647bp
    Genomic GenBank:FO704880 (1) 37227bp
    Select Tool
    Polypeptide UniProtKB:Q6PBZ8 (1) 245aa
    Sequence Clusters UniGene:107456 (1)
    Sequence Information (all 18)
    OTHER exosc4 GENE PAGES
  • Alliance (1)
  • Gene:393712 (1)
  • VEGA:OTTDARG00000040916 (1)
  • Ensembl(GRCz11):ENSDARG00000103432 (1)
  • ORTHOLOGY for exosc4 (Chr: 2)
    CITATIONS (23)