ZFIN ID: ZDB-GENE-040426-1683
Gene Name: hippocalcin
Gene Symbol: hpca    Nomenclature History

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Previous Name: zgc:73126

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 19 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Is expressed in hatching gland; nervous system; neural rod; and neural tube. Human ortholog(s) of this gene implicated in torsion dystonia 2. Orthologous to human HPCA (hippocalcin).
Genome Resources: Alliance (1),  Gene:393696 (1),  Ensembl(GRCz11):ENSDARG00000018397 (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la010882Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa1437 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH hpca HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    torsion dystonia 2 Alliance Dystonia 2, torsion, autosomal recessive 224500
    DISEASE ASSOCIATED WITH hpca VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component cellular_component (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA hpca-201 (1)    Ensembl 2361
    ncRNA hpca-002 (1)    Ensembl 452
    hpca-003 (1)    Ensembl 213
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM hpca No data available
    MARKER RELATIONSHIPS
    hpca Contained in: [BAC] DKEY-148N22 (1) (order this), DKEY-255N2 (1) (order this)
    hpca Encodes: [cDNA] MGC:73126 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_200723 (1) 2375 nt
    Genomic GenBank:BX293540 (1) 181168 nt
    Select Tool
    Polypeptide UniProtKB:Q6PC34 (1) 193 aa
    Sequence Information (all 11)
    ORTHOLOGY for hpca ( Chr: 19 )
    CITATIONS (25)