ZFIN ID: ZDB-GENE-040426-1663
Gene Name: calcium and integrin binding family member 2
Gene Symbol: cib2
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:73079

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Location: Chr: 25 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 7 figures from 2 publications
Directly Submitted Expression Data: 6 figures (6 images) from Thisse et al., 2004 [MGC:73079]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents:
PHENOTYPE
Data: 3 figures from Riazuddin et al., 2012
Observed in:
DISEASE ASSOCIATED WITH cib2 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
autosomal recessive nonsyndromic deafness 48 Deafness, autosomal recessive 48 609439
Usher syndrome type 1J Usher syndrome, type IJ 614869
DISEASE ASSOCIATED WITH cib2 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process camera-type eye development (more)
Molecular Function calcium ion binding (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002048 (1)
  • InterPro:IPR011992 (1)
  • InterPro:IPR018247 (1)
  • PROSITE:PS00018 (1)
  • PROSITE:PS50222 (1)
  • Pfam:PF13499 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ottdart00000051989 (1) 1539
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM cib2 No data available
    MARKER RELATIONSHIPS
    cib2Contained in: [BAC] CH73-295D16 (1) (order this), DKEY-21I6 (1) (order this), DKEY-200J6 (1) (order this)
    cib2Encodes: [cDNA] MGC:73079 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200706 (1) 1558bp
    Genomic GenBank:CR381664 (1) 277093bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6PC72 (1) 187aa
    Sequence Clusters UniGene:82904 (1)
    Sequence Information (all 13)
    OTHER cib2 GENE PAGES
  • Alliance (1)
  • Gene:393679 (1)
  • VEGA:OTTDARG00000036505 (1)
  • Ensembl(GRCz11):ENSDARG00000102820 (1)
  • ORTHOLOGY for cib2 (Chr: 25)
    CITATIONS (15)