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ZIRC
ZFIN ID: ZDB-GENE-040426-1652
Gene Name: LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
Gene Symbol: lsm4
Sequence Ontology ID : SO:0001217

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Previous Names: zgc:73057, zgc:77848

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(Including Attributions)
Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have U6 snRNA binding activity. Predicted to be involved in cytoplasmic mRNA processing body assembly and spliceosomal snRNP assembly. Predicted to localize to the P-body and U6 snRNP.  ...
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:73057]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa41776 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH lsm4 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH lsm4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mRNA processing (more)
    Cellular Component nucleus (more)
    Molecular Function RNA binding (more)
    GO Terms (all 13)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA lsm4-201 (1) 832
    lsm4-202 (1) 733
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM lsm4 No data available
    MARKER RELATIONSHIPS
    lsm4 Contained in: [BAC] CH211-255D18 (1) (order this)
    lsm4 Encodes: [cDNA] MGC:73057 (1) (order this), MGC:77848 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200696 (1) 806 bp
    Genomic GenBank:BX936438 (1) 188269 bp
    Select Tool
    Polypeptide UniProtKB:Q6P6E4 (1) 143 aa
    Sequence Clusters UniGene:159006 (1)
    Sequence Information (all 13)
    ORTHOLOGY for lsm4 ( Chr: 11 )
    CITATIONS (23)