ZFIN ID: ZDB-GENE-040426-1561
Gene Name: PRP31 pre-mRNA processing factor 31 homolog (yeast)
Gene Symbol: prpf31
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:66177 (1)

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(Including Attributions)
Location: Chr: 16 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have U4atac snRNA binding activity; involved in mRNA splicing, via spliceosome and retina development in camera-type eye; predicted to localize to the MLL1 complex and intracellular  ...
GENE EXPRESSION
All Expression Data: 6 figures from 3 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:66177]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa2865 Point Mutation Unknown Premature Stop ENU
sa5624 Point Mutation Unknown Premature Stop ENU
sa22886 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa25022 Point Mutation Unknown Premature Stop ENU
    Targeting reagents:
    PHENOTYPE
    Data: 4 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH prpf31 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    retinitis pigmentosa 11 Retinitis pigmentosa 11 600138
    DISEASE ASSOCIATED WITH prpf31 VIA EXPERIMENTAL MODELS
    Human Disease Fish Conditions Citations
    retinitis pigmentosa WT + MO1-prpf31 standard conditions (2)
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mRNA splicing, via spliceosome (more)
    Cellular Component MLL1 complex (more)
    Molecular Function U4atac snRNA binding (more)
    GO Terms (all 18)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002687 (1)
  • InterPro:IPR012976 (1)
  • InterPro:IPR019175 (1)
  • InterPro:IPR027105 (1)
  • InterPro:IPR029012 (1)
  • InterPro:IPR036070 (1)
  • PROSITE:PS51358 (1)
  • Pfam:PF01798 (1)
  • Pfam:PF09785 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA prpf31-201 (1) 1867
    prpf31-202 (1) 908
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM prpf31
    MARKER RELATIONSHIPS
    prpf31Contained in: [BAC] DKEY-40M6 (1) (order this)
    prpf31Encodes: [cDNA] MGC:66177 (1) (order this), MGC:192452 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200504 (1) 1938bp
    Genomic GenBank:CR854927 (1) 217399bp Blast at MegaBLAST
    Polypeptide UniProtKB:B2GS36 (1) 508aa
    Sequence Clusters UniGene:76439 (1)
    Sequence Information (all 17)
    OTHER prpf31 GENE PAGES
  • Alliance (1)
  • Gene:393476 (1)
  • VEGA:OTTDARG00000033397 (1)
  • Ensembl(GRCz11):ENSDARG00000095904 (2)
  • ORTHOLOGY for prpf31 (Chr: 16)
    CITATIONS (27)