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ZIRC
ZFIN ID: ZDB-GENE-040426-1412
Gene Name: immunoglobulin-like domain containing receptor 1a
Gene Symbol: ildr1a    Nomenclature History

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Previous Name: zgc:64227

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 1 Mapping Details/Browsers
Description: Predicted to localize to the integral component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 42. Is expressed in EVL; ectoderm; and sensory system. Orthologous to human ILDR1 (immunoglobulin like domain containing receptor 1).
Genome Resources: Alliance (1),  Gene:393364 (1),  Ensembl(GRCz11):ENSDARG00000103929 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (9 images) from Thisse et al., 2004 [MGC:64227]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
zko34a Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • zko34b Indel Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-ildr1a
    2
    CRISPR2-ildr1a
    1
    CRISPR3-ildr1a
    2
    MO1-ildr1a N/A 1
    MO2-ildr1a N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ildr1a HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    autosomal recessive nonsyndromic deafness 42 Alliance Deafness, autosomal recessive 42 609646
    DISEASE ASSOCIATED WITH ildr1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    Molecular Function molecular_function (more)
    GO Terms (all 3)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    aberrant processed transcript ildr1a-202 (1)    Ensembl 618
    mRNA ildr1a-205 (1)    Ensembl 2623
    ildr1a-206 (1)    Ensembl 917
    ncRNA ildr1a-002 (1)    Ensembl 389
    ildr1a-005 (1)    Ensembl 632
    ildr1a-006 (1)    Ensembl 402
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ildr1a No data available
    MARKER RELATIONSHIPS
    ildr1a Contained in: [Fosmid] ZFOS-1011F11 (1)
    ildr1a Encodes: [cDNA] MGC:64227 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200393 (1) 2267 bp
    Genomic GenBank:FP475876 (1) 37557 bp
    Select Tool
    Polypeptide UniProtKB:A4JYQ3 (1) 464 aa
    Sequence Clusters UniGene:82397 (1)
    Sequence Information (all 15)
    ORTHOLOGY for ildr1a ( Chr: 1 )
    CITATIONS (19)