ZFIN ID: ZDB-GENE-040426-1377
Gene Name: sorting nexin 15
Gene Symbol: snx15
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:64136 (1)

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(Including Attributions)
Location: Chr: 7 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have phosphatidylinositol binding activity; predicted to be involved in intracellular protein transport; predicted to localize to the early endosome; orthologous to human SNX15 (sorting  ...
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (5 images) from Thisse et al., 2004 [MGC:64136]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa44655 Point Mutation Unknown Unknown ENU
PHENOTYPE No data available
DISEASE ASSOCIATED WITH snx15 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH snx15 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process intracellular protein transport (more)
Cellular Component cytoplasm (more)
Molecular Function phosphatidylinositol binding (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001683 (1)
  • InterPro:IPR007330 (1)
  • InterPro:IPR035048 (1)
  • InterPro:IPR036181 (1)
  • InterPro:IPR036871 (1)
  • PROSITE:PS50195 (1)
  • Pfam:PF00787 (1)
  • Pfam:PF04212 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA snx15-001 (1) 2566
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM snx15 No data available
    MARKER RELATIONSHIPS
    snx15Contained in: [BAC] CH211-285J22 (1) (order this), DKEY-170H8 (1) (order this)
    snx15Encodes: [cDNA] MGC:64136 (1) (order this), MGC:174530 (1) (order this), MGC:198066 (1) (order this), MGC:198420 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001111237 (1) 1800bp
    Genomic GenBank:BX322601 (1) 210153bp Blast at MegaBLAST
    Polypeptide UniProtKB:A9JT54 (1) 398aa
    Sequence Clusters UniGene:115703 (1)
    Sequence Information (all 25)
    OTHER snx15 GENE PAGES
  • Alliance (1)
  • Gene:393352 (1)
  • VEGA:OTTDARG00000043647 (1)
  • ORTHOLOGY for snx15 (Chr: 7)
    CITATIONS (16)