ZFIN ID: ZDB-GENE-040426-1350
Gene Name: SFT2 domain containing 1
Gene Symbol: sft2d1
Sequence Ontology ID : SO:0000704

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Previous Names: c6orf83, zgc:64053 (1)

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(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in protein transport and vesicle-mediated transport; predicted to localize to the integral component of membrane; orthologous to human SFT2D1 (SFT2 domain containing 1).
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:64053]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa10976 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sft2d1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sft2d1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein transport (more)
    Cellular Component integral component of membrane (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR007305 (1)
  • InterPro:IPR011691 (1)
  • Pfam:PF04178 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sft2d1-001 (1) 2548
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sft2d1 No data available
    MARKER RELATIONSHIPS
    sft2d1Contained in: [BAC] CH211-130H14 (1) (order this), DKEYP-121D4 (1)
    sft2d1Encodes: [cDNA] MGC:64053 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200372 (1) 2569bp
    Genomic GenBank:CU571336 (1) 156589bp
    Select Tool
    Polypeptide UniProtKB:F1QQJ6 (1) 161aa
    Sequence Clusters UniGene:84358 (1)
    Sequence Information (all 14)
    OTHER sft2d1 GENE PAGES
  • Alliance (1)
  • Gene:393343 (1)
  • VEGA:OTTDARG00000029382 (1)
  • Ensembl(GRCz11):ENSDARG00000007362 (2)
  • ORTHOLOGY for sft2d1 (Chr: 13)
    CITATIONS (19)