ZFIN ID: ZDB-GENE-040426-1307
Gene Name: programmed cell death 6
Gene Symbol: pdcd6    Nomenclature History

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Previous Name: zgc:63952 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 24 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Is expressed in notochord; pectoral fin cartilage; and pharyngeal arch 3-7 skeleton. Orthologous to human PDCD6 (programmed cell death 6).
Genome Resources: Alliance (1),  Gene:393925 (1),  Ensembl(GRCz11):ENSDARG00000005220 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 4 figures (5 images) from Thisse et al., 2004 [MGC:63952]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Long-pec (48.0h-60.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la022842Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pdcd6 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pdcd6 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY No data available
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA pdcd6-201 (1)    Ensembl 1278
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM pdcd6 No data available
    MARKER RELATIONSHIPS
    pdcd6 Contained in: [BAC] CH211-196F5 (1)
    pdcd6 Encodes: [cDNA] MGC:63952 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_200950 (1) 1288 nt
    Genomic GenBank:BX119976 (1) 190000 nt
    Select Tool
    Polypeptide RefSeq:NP_957244 (1)
    Sequence Information (all 7)
    ORTHOLOGY for pdcd6 ( Chr: 24 )
    CITATIONS (22)