ZFIN ID: ZDB-GENE-040426-1274
Gene Name: SRY (sex determining region Y)-box 4b
Gene Symbol: sox4b
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:63851

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Location: Chr: 16 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA-binding activity transcription factor activity, RNA polymerase II-specific; involved in closure of optic fissure, endocrine pancreas development, and negative regulation of  ...
GENE EXPRESSION
All Expression Data: 24 figures from 10 publications
Directly Submitted Expression Data: 5 figures (18 images) from Thisse et al., 2004 [MGC:63851]
Wild-type Stages, Structures: Blastula:30%-epiboly (4.66h-5.25h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa39071 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: Fig. 5 from Mavropoulos et al., 2005
    Observed in:
    DISEASE ASSOCIATED WITH sox4b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sox4b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process closure of optic fissure (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR009071 (1)
  • InterPro:IPR017386 (1)
  • InterPro:IPR036910 (1)
  • PROSITE:PS50118 (1)
  • Pfam:PF00505 (1)
  • TRANSCRIPTS No data available
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sox4b No data available
    MARKER RELATIONSHIPS
    sox4bEncodes: [cDNA] MGC:63851 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200901 (1) 3015bp
    Genomic GenBank:CABZ01114992 (1) 4245bp
    Polypeptide UniProtKB:A0A0R4IQD2 (1) 342aa
    Sequence Clusters UniGene:151812 (1)
    Sequence Information (all 15)
    OTHER sox4b GENE PAGES
  • Alliance (1)
  • Gene:393875 (1)
  • Ensembl(GRCz11):ENSDARG00000098834 (1)
  • ORTHOLOGY for sox4b (Chr: 16)
    CITATIONS (31)