Gene

msi2b

ID

ZDB-GENE-040426-1268

Name

musashi RNA-binding protein 2b

Symbol

msi2b Nomenclature History

Previous Names

zgc:174035 (1)
zgc:63812 (1)

Type

protein_coding_gene

Location

Chr: 15 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Involved in olfactory bulb development. Predicted to localize to cytoplasm; nucleus; and polysome. Is expressed in nervous system and otic vesicle. Orthologous to human MSI2 (musashi RNA binding protein 2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Hochgreb-Hägele et al., 2014
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With msi2b Human Ortholog

No data available

Associated With msi2b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR034126	RNA-binding protein Musashi homologue, RNA recognition motif 2
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA-binding protein Musashi homologue, RNA recognition motif 2	RNA recognition motif domain
UniProtKB:A0A8M9QBW9 InterPro	363
UniProtKB:A0A8M2B414 InterPro	307
UniProtKB:Q7SXT6 InterPro	408
UniProtKB:A0A8M2B3X4 InterPro	329
UniProtKB:A0A8M2B4J9 InterPro	389
UniProtKB:A0A8M3AIG3 InterPro	408
UniProtKB:A0A8M9QH54 InterPro	284
UniProtKB:A0A8M2B3X1 InterPro	367
UniProtKB:A0A8M3ASN7 InterPro	348

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	msi2b-201 (1) Ensembl	Havana	914 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	msi2b-202 (1) Ensembl	Havana	2981 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	msi2b-203 (1) Ensembl	Havana	1107 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	msi2b-205 (1) Ensembl	Havana	434 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	msi2b-206 (1) Ensembl	Havana	728 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	msi2b-207 (1) Ensembl	Havana	608 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	msi2b-208 (1) Ensembl	Havana	749 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	msi2b-209 (1) Ensembl	Havana	520 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	msi2b-211 (1) Ensembl	Havana	731 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	msi2b-212 (1) Ensembl	Havana	1297 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	msi2b-213 (1) Ensembl	Havana	768 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	msi2b-214 (1) Ensembl	Havana	617 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	msi2b-215 (1) Ensembl	Havana	506 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	msi2b-002 (1) Ensembl	Havana	804 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	msi2b-013 (1) Ensembl	Havana	751 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations