ZFIN ID: ZDB-GENE-040426-1259
Gene Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Symbol: ddx39b    Nomenclature History

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Previous Names: bat1, zgc:63773 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 19 Mapping Details/Browsers
Description: Predicted to have RNA binding activity and RNA helicase activity. Predicted to be involved in mRNA export from nucleus and mRNA splicing, via spliceosome. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human DDX39B (DExD-box helicase 39B).
Genome Resources: Alliance (1),  Gene:393917 (1),  Ensembl(GRCz11):ENSDARG00000036069 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:63773]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la020710Tg Transgenic Insertion Unknown Unknown DNA
PHENOTYPE No data available
DISEASE ASSOCIATED WITH ddx39b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH ddx39b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA export from nucleus (more)
Molecular Function ATP binding (more)
GO Terms (all 6)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA ddx39b-201 (1)    Ensembl 1928
ncRNA ddx39b-002 (1)    Ensembl 413
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM ddx39b No data available
MARKER RELATIONSHIPS
ddx39b Contained in: [BAC] CH73-337N6 (1), CH211-152P11 (1)
ddx39b Encodes: [cDNA] MGC:63773 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_200943 (1) 1915 nt
Genomic GenBank:BX511233 193921 nt
Select Tool
Polypeptide UniProtKB:Q7SXU7 (1) 435 aa
Sequence Information (all 13)
ORTHOLOGY for ddx39b ( Chr: 19 )
CITATIONS (28)