ZFIN ID: ZDB-GENE-040426-1235
Gene Name: vacuolar protein sorting 4 homolog B
Gene Symbol: vps4b    Nomenclature History

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Previous Name: zgc:63682

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 2 Mapping Details/Browsers
Description: Predicted to have ATPase activity. Involved in odontogenesis. Predicted to localize to nucleus. Is expressed in ceratobranchial 5 primary tooth; pharyngeal arch 3-7; and pharyngeal pouch. Orthologous to human VPS4B (vacuolar protein sorting 4 homolog B).
Genome Resources: Alliance (1),  Gene:393880 (1),  Ensembl(GRCz11):ENSDARG00000069175 (2)
GENE EXPRESSION
All Expression Data: Fig. S2 from Yang et al., 2016
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Larval:Day 6 (144.0h-168.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
fcc88p1Gt Transgenic Insertion Unknown Splicing Variant DNA
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
MO1-vps4b N/A 1
MO2-vps4b N/A 1
DISEASE ASSOCIATED WITH vps4b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH vps4b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process odontogenesis (more)
Cellular Component nucleus (more)
Molecular Function ATP binding (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA vps4b-201 (1)    Ensembl 2564
vps4b-202 (1)    Ensembl 2648
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM vps4b No data available
MARKER RELATIONSHIPS
vps4b Contained in: [BAC] CH73-81E6 (1), CH211-153J14 (1)
vps4b Encodes: [cDNA] MGC:63682 (1), MGC:174037 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001100962 (1) 2564 nt
Genomic GenBank:BX548249 153142 nt
Select Tool
Polypeptide UniProtKB:A0A0R4IPK7 (1) 507 aa
Sequence Information (all 22)
ORTHOLOGY for vps4b ( Chr: 2 )
CITATIONS (20)