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General Information
ZIRC
ZFIN ID: ZDB-GENE-040426-1183
Gene Name: spermidine synthase
Gene Symbol: srm
Sequence Ontology ID : SO:0000704

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Previous Names: fa18b03, id:ibd1177, wu:fa18b03, zgc:63600

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(Including Attributions)
Location: Chr: 23 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have spermidine synthase activity; involved in spermidine biosynthetic process; orthologous to human SRM (spermidine synthase).
GENE EXPRESSION
All Expression Data: 3 figures from 3 publications
Directly Submitted Expression Data: 1 figure (1 image) from Kudoh et al., 2001 [ibd1177]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:6896966]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
t26743 Point Mutation Exon 2 Premature Stop ENU
Targeting reagents:
DISEASE ASSOCIATED WITH srm HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH srm VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process spermidine biosynthetic process (more)
Cellular Component cellular_component (more)
Molecular Function catalytic activity (more)
GO Terms (all 7)
TRANSCRIPTS
Type Name Length (bp) Analysis
mRNA srm-201 (1) 2959
GENE PRODUCT DESCRIPTION
INTERACTIONS AND PATHWAYS
ANTIBODIESNo data available
PLASMIDSNo data available
CONSTRUCTS WITH SEQUENCES FROM srm No data available
MARKER RELATIONSHIPS
srmContained in: [BAC] CH211-237P19 (1) (order this), DKEY-23G9 (1) (order this)
srmEncodes: [EST] fa18b03, ibd1177 (order this), IMAGE:6896966 (1) (order this)
[cDNA] MGC:63600 (1) (order this)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_201034 (1) 1734bp
Genomic GenBank:CR381533 (1) 119891bp
Select Tool
Polypeptide UniProtKB:F1R3G8 (1) 289aa
Sequence Clusters UniGene:84961 (1)
Sequence Information (all 15)
ORTHOLOGY for srm (Chr: 23)
CITATIONS (20)