ZFIN ID: ZDB-GENE-040426-1149
Gene Name: ATG13 autophagy related 13 homolog (S. cerevisiae)
Gene Symbol: atg13
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:63526

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Location: Chr: 7 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have protein kinase binding activity and protein kinase regulator activity; predicted to be involved in several processes, including activation of protein kinase activity,  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:63526]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:7138952]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents:
PHENOTYPE No data available
DISEASE ASSOCIATED WITH atg13 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH atg13 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process autophagosome assembly (more)
Cellular Component Atg1/ULK1 kinase complex (more)
Molecular Function protein kinase binding (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR018731 (1)
  • InterPro:IPR036570 (1)
  • InterPro:IPR040182 (1)
  • Pfam:PF10033 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA atg13-201 (1) 2463
    atg13-202 (1) 755
    aberrant processed transcript atg13-203 (1) 848
    mRNA atg13-204 (1) 822
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM atg13 No data available
    MARKER RELATIONSHIPS
    atg13Contained in: [BAC] DKEY-23N7 (1) (order this)
    atg13Encodes: [EST] IMAGE:7138952 (1) (order this)
    [cDNA] MGC:63526 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200433 (1) 2471bp
    Genomic GenBank:BX957256 (1) 227909bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q7SYE0 (1) 503aa
    Sequence Clusters UniGene:82470 (1)
    Sequence Information (all 16)
    OTHER atg13 GENE PAGES
  • Alliance (1)
  • Gene:393405 (1)
  • VEGA:OTTDARG00000020219 (1)
  • Ensembl(GRCz11):ENSDARG00000036040 (2)
  • ORTHOLOGY for atg13 (Chr: 7)
    CITATIONS (20)