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ZIRC
ZFIN ID: ZDB-GENE-040426-1148
Gene Name: vesicle transport through interaction with t-SNAREs 1B
Gene Symbol: vti1b    Nomenclature History

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Previous Name: zgc:63525

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 13 Mapping Details/Browsers
Description: Predicted to have SNAP receptor activity and SNARE binding activity. Predicted to be involved in Golgi vesicle transport; protein targeting to vacuole; and retrograde transport, endosome to Golgi. Predicted to localize to several cellular components, including the Golgi apparatus; SNARE complex; and cytoplasmic vesicle. Orthologous to human VTI1B (vesicle transport through interaction with t-SNAREs 1B).
Genome Resources: Alliance (1),  Gene:394011 (1),  Ensembl(GRCz11):ENSDARG00000039270 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:63525]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa38954 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-vti1b N/A 1
    MO2-vti1b N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH vti1b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH vti1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process intracellular protein transport (more)
    Cellular Component integral component of membrane (more)
    Molecular Function SNAP receptor activity (more)
    GO Terms (all 17)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA vti1b-201 (1)    Ensembl 1804
    vti1b-202 (1)    Ensembl 798
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM vti1b No data available
    MARKER RELATIONSHIPS
    vti1b Contained in: [BAC] CH211-12D10 (1) (order this)
    vti1b Encodes: [cDNA] MGC:63525 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_201036 (1) 1831 bp
    Genomic GenBank:BX470227 (1) 177716 bp
    Select Tool
    Polypeptide UniProtKB:Q7SY45 (1) 225 aa
    Sequence Clusters UniGene:82463 (1)
    Sequence Information (all 10)
    ORTHOLOGY for vti1b ( Chr: 13 )
    CITATIONS (19)