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ZIRC
ZFIN ID: ZDB-GENE-040426-1108
Gene Name: VPS26, retromer complex component A
Gene Symbol: vps26a
Sequence Ontology ID : SO:0000704

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Previous Names: vps26 (1), wu:fc67e06, zgc:56673 (1)

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(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to localize to the endosome and retromer complex. Orthologous to human VPS26A  ...
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6902937]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH vps26a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH vps26a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process protein transport (more)
Cellular Component endosome (more)
Molecular Function obsolete protein transporter activity (more)
GO Terms (all 10)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR014752 (1)
  • InterPro:IPR028934 (1)
  • Pfam:PF03643 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA vps26a-002 (1) 488
    vps26a-003 (1) 514
    mRNA vps26a-201 (1) 2375
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM vps26a No data available
    MARKER RELATIONSHIPS
    vps26aContained in: [BAC] DKEY-226B20 (1) (order this)
    vps26aEncodes: [EST] fc67e06 (1), IMAGE:6902937 (1) (order this)
    [cDNA] MGC:56673 (1) (order this), MGC:86665 (1) (order this), MGC:174764 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200907 (1) 2395bp
    Genomic GenBank:BX546482 (1) 206949bp Blast at MegaBLAST
    Polypeptide UniProtKB:A9JRS5 (1) 327aa
    Sequence Clusters UniGene:32886 (1)
    Sequence Information (all 23)
    ORTHOLOGY for vps26a (Chr: 13)
    CITATIONS (23)