ZFIN ID: ZDB-GENE-040426-1094
Gene Name: transformer 2 beta homolog
Gene Symbol: tra2b    Nomenclature History

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Previous Names: sfrs10, zgc:56612 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 9 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to localize to spliceosomal complex. Is expressed in brain. Orthologous to human TRA2B (transformer 2 beta homolog).
Genome Resources: Alliance (1),  Gene:394172 (1),  Ensembl(GRCz11):ENSDARG00000002168 (2)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6909212]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH tra2b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH tra2b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process positive regulation of mRNA splicing, via spliceosome (more)
Cellular Component spliceosomal complex (more)
Molecular Function nucleic acid binding (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA tra2b-201 (1)    Ensembl 1312
ncRNA tra2b-002 (1)    Ensembl 598
tra2b-003 (1)    Ensembl 918
tra2b-004 (1)    Ensembl 793
tra2b-005 (1)    Ensembl 712
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM tra2b No data available
MARKER RELATIONSHIPS
tra2b Contained in: [BAC] CH211-125M20 (1), CH211-244A17 (1)
tra2b Encodes: [EST] IMAGE:6909212 (1)
[cDNA] MGC:56612 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_201197 (1) 1310 nt
Genomic GenBank:BX511126 (1) 156247 nt
Select Tool
Polypeptide UniProtKB:B0V332 (1) 278 aa
Sequence Information (all 15)
ORTHOLOGY for tra2b ( Chr: 9 )
CITATIONS (23)