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ZIRC
ZFIN ID: ZDB-GENE-040426-1084
Gene Name: zgc:56585
Gene Symbol: zgc:56585    Nomenclature History

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Previous Name: zgc:77077

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 21 Mapping Details/Browsers
Description: Predicted to have oxidoreductase activity. Predicted to localize to the cytoplasm. Human ortholog(s) of this gene implicated in colon carcinoma and primary hypertrophic osteoarthropathy. Is expressed in segmental plate and yolk syncytial layer. Orthologous to human HPGD (15-hydroxyprostaglandin dehydrogenase).
Genome Resources: Alliance (1),  Gene:393297 (1),  Ensembl(GRCz11):ENSDARG00000026236 (2)

Nomenclature Note: This gene is characterized by full length cDNAs isolated as part of the Zebrafish Gene Collection (ZGC). When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix `zgc:' indicates that this gene is represented by cDNAs generated by the ZGC project.

GENE EXPRESSION
Directly Submitted Expression Data: 4 figures (5 images) from Thisse et al., 2004 [MGC:56585]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Segmentation:14-19 somites (16.0h-19.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa16801 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH zgc:56585 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH zgc:56585 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component cytoplasm (more)
    Molecular Function oxidoreductase activity (more)
    GO Terms (all 2)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA zgc:56585-202 (1)    Ensembl 2029
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM zgc:56585 No data available
    MARKER RELATIONSHIPS
    zgc:56585 Contained in: [BAC] CH211-268H1 (1) (order this)
    zgc:56585 Encodes: [cDNA] MGC:56585 (1) (order this), MGC:77077 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200327 (1) 1870 bp
    Genomic GenBank:BX957298 (1) 140969 bp
    Select Tool
    Polypeptide UniProtKB:F1QBQ6 (1) 270 aa
    Sequence Clusters UniGene:24982 (1)
    Sequence Information (all 21)
    ORTHOLOGY for zgc:56585 ( Chr: 21 )
    CITATIONS (17)