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ZIRC
ZFIN ID: ZDB-GENE-040426-1067
Gene Name: LIM and cysteine-rich domains 1
Gene Symbol: lmcd1    Nomenclature History

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Previous Name: zgc:56533 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 22 Mapping Details/Browsers
Description: Predicted to have zinc ion binding activity. Is expressed in cardiac ventricle and myocardium. Orthologous to human LMCD1 (LIM and cysteine rich domains 1).
Genome Resources: Alliance (1),  Gene:394045 (1),  Ensembl(GRCz11):ENSDARG00000002002 (2)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56533]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa9066 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa19308 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39388 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-lmcd1 N/A 1
    MO2-lmcd1 N/A 1
    PHENOTYPE
    Data: Fig. 4 from Dina et al., 2015
    Observed in:
    DISEASE ASSOCIATED WITH lmcd1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH lmcd1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 3)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA lmcd1-201 (1)    Ensembl 797
    lmcd1-202 (1)    Ensembl 1453
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM lmcd1 No data available
    MARKER RELATIONSHIPS
    lmcd1 Contained in: [Fosmid] CH1073-91K2 (1) (order this)
    lmcd1 Encodes: [cDNA] MGC:56533 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_201070 (1) 1476 bp
    Genomic GenBank:FP102519 (1) 37082 bp
    Select Tool
    Polypeptide UniProtKB:E7FCK0 (1) 342 aa
    Sequence Clusters UniGene:17244 (1)
    Sequence Information (all 18)
    ORTHOLOGY for lmcd1 ( Chr: 22 )
    CITATIONS (19)