ZFIN ID: ZDB-GENE-040426-1004
Gene Name: proteasome 26S subunit, non-ATPase 13
Gene Symbol: psmd13    Nomenclature History

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Attributions

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Previous Names: zgc:56377 (1), zgc:77482

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 25 Mapping Details/Browsers
Description: Predicted to have structural molecule activity. Involved in hemopoiesis. Predicted to localize to the cytosol; nucleus; and proteasome regulatory particle, lid subcomplex. Orthologous to human PSMD13 (proteasome 26S subunit, non-ATPase 13).
Genome Resources: Alliance (1),  Gene:393922 (1),  Ensembl(GRCz11):ENSDARG00000016239 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56377]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa5997 Point Mutation Unknown Splice Site ENU
sa10990 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17160 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38015 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39475 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-psmd13 N/A 1
    MO2-psmd13 N/A 1
    DISEASE ASSOCIATED WITH psmd13 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH psmd13 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process hemopoiesis (more)
    Cellular Component proteasome complex (more)
    Molecular Function structural molecule activity (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000717 Proteasome component (PCI) domain
    Family IPR035298 26S Proteasome non-ATPase regulatory subunit 13
    Homologous_superfamily IPR036390 Winged helix DNA-binding domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA psmd13-201 (1)    Ensembl 1403
    ncRNA psmd13-002 (1)    Ensembl 536
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM psmd13 No data available
    MARKER RELATIONSHIPS
    psmd13 Contained in: [BAC] DKEYP-88B11 (1)
    psmd13 Encodes: [cDNA] MGC:56377 (1), MGC:77482 (1), MGC:174830 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_200948 (1) 1260 nt
    Genomic GenBank:BX537278 (1) 78276 nt
    Select Tool
    Polypeptide UniProtKB:Q6TGV4 (1) 404 aa
    Sequence Information (all 22)
    ORTHOLOGY for psmd13 ( Chr: 25 )
    CITATIONS (25)