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General Information
ZIRC
ZFIN ID: ZDB-GENE-040426-1000
Gene Name: tripartite motif containing 47
Gene Symbol: trim47    Nomenclature History

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Previous Names: fc04b02, wu:fc04b02, zgc:56368 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 10 Mapping Details/Browsers
Description: Predicted to have zinc ion binding activity.
Genome Resources: Alliance (1),  Gene:393254 (1),  Ensembl(GRCz11):ENSDARG00000056678 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56368]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ihb82 Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • ihb86 Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • sa21744 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH trim47 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH trim47 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Molecular Function metal ion binding (more)
    GO Terms (all 2)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA trim47-201 (1)    Ensembl 3239
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM trim47 No data available
    MARKER RELATIONSHIPS
    trim47 Contained in: [BAC] CH211-210L19 (1) (order this)
    trim47 Encodes: [EST] fc04b02
    [cDNA] MGC:56368 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200284 (1) 2104 bp
    Genomic GenBank:BX511060 (1) 139250 bp
    Select Tool
    Polypeptide UniProtKB:Q7ZU70 (1) 479 aa
    Sequence Clusters UniGene:105276 (1)
    Sequence Information (all 11)
    ORTHOLOGY for trim47 ( Chr: 10 )
    CITATIONS (23)