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ZIRC
ZFIN ID: ZDB-GENE-040308-2
Gene Name: casc3 exon junction complex subunit
Gene Symbol: casc3
Sequence Ontology ID : SO:0000704

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Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to the U2-type catalytic step 1 spliceosome and exon-exon junction complex.  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2005 [eu819]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH casc3 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH casc3 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA splicing, via spliceosome (more)
Cellular Component nucleus (more)
Molecular Function RNA binding (more)
GO Terms (all 17)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR018545 (1)
  • InterPro:IPR028544 (1)
  • Pfam:PF09405 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA casc3-002 (1) 564
    mRNA casc3-201 (1) 3671
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM casc3 No data available
    MARKER RELATIONSHIPS
    casc3Contained in: [BAC] CH73-34I6 (1) (order this), DKEY-225F5 (1) (order this)
    casc3Encodes: [EST] eu819 (1)
    [cDNA] MGC:136501 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_205716 (1) 3672bp
    Genomic GenBank:BX682558 (1) 146807bp
    Select Tool
    Polypeptide UniProtKB:Q1ECZ4 (1) 754aa
    Sequence Clusters UniGene:80222 (1)
    Sequence Information (all 16)
    ORTHOLOGY for casc3 (Chr: 3)
    CITATIONS (24)