ZFIN ID: ZDB-GENE-040121-7
Gene Name: archain 1b
Gene Symbol: arcn1b    Nomenclature History

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Previous Names: arcn1l, wu:fa10d11, wu:fb01b08, wu:fb76d02, wu:fc52b08

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 15 Mapping Details/Browsers
Description: Predicted to be involved in Golgi localization; endoplasmic reticulum to Golgi vesicle-mediated transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to localize to COPI vesicle coat and cytosol. Is expressed in several structures, including axis; notochord; otic vesicle; pectoral fin; and pharyngeal arch 3-7 skeleton. Orthologous to human ARCN1 (archain 1).
Genome Resources: Alliance (1),  Gene:399661 (1),  Ensembl(GRCz11):ENSDARG00000031214 (2)
GENE EXPRESSION
All Expression Data: 7 figures from 2 publications
Directly Submitted Expression Data: 6 figures (12 images) from Thisse et al., 2001 [cb334]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa35850 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH arcn1b HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Short stature, rhizomelic, with microcephaly, micrognathia, and developmental delay 617164
    DISEASE ASSOCIATED WITH arcn1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein transport (more)
    Cellular Component COPI vesicle coat (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA arcn1b-201 (1)    Ensembl 2757
    arcn1b-202 (1)    Ensembl 790
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM arcn1b No data available
    MARKER RELATIONSHIPS
    arcn1b Contained in: [BAC] CH211-262M14 (1)
    arcn1b Contains: [STS] chunp30165
    arcn1b Encodes: [EST] cb334 (order this), fb01b08
    [cDNA] MGC:56094 (1), MGC:86617 (1)
    arcn1b Has Artifact: [EST] fa10d11
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_201993 (1) 2699 nt
    Genomic GenBank:CR385077 (1) 105764 nt
    Select Tool
    Polypeptide UniProtKB:Q7ZU89 (1) 512 aa
    Sequence Information (all 16)
    ORTHOLOGY for arcn1b ( Chr: 15 )
    CITATIONS (24)