ZFIN ID: ZDB-GENE-040109-1
Gene Name: NOP56 ribonucleoprotein homolog
Gene Symbol: nop56    Nomenclature History

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Previous Names: nol5a, NOP56 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 21 Mapping Details/Browsers
Description: Predicted to have snoRNA binding activity. Involved in heart development. Predicted to localize to box C/D snoRNP complex and small-subunit processome. Is expressed in midbrain. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 36. Orthologous to human NOP56 (NOP56 ribonucleoprotein).
Genome Resources: Alliance (1),  Gene:394196 (1),  Ensembl(GRCz11):ENSDARG00000012820 (2)
GENE EXPRESSION
All Expression Data: Fig. 4 from Recher et al., 2013
Wild-type Stages, Structures: Hatching:Long-pec (48.0h-60.0h) to Hatching:Long-pec (48.0h-60.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi3101Tg Transgenic Insertion Intron 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la010165Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12582 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • DISEASE ASSOCIATED WITH nop56 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    spinocerebellar ataxia type 36 Alliance Spinocerebellar ataxia 36 614153
    DISEASE ASSOCIATED WITH nop56 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process heart development (more)
    Cellular Component box C/D snoRNP complex (more)
    Molecular Function snoRNA binding (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    aberrant processed transcript nop56-201 (1)    Ensembl 836
    nop56-202 (1)    Ensembl 1134
    mRNA nop56-203 (1)    Ensembl 2039
    ncRNA nop56-003 (1)    Ensembl 826
    nop56-004 (1)    Ensembl 794
    nop56-005 (1)    Ensembl 799
    nop56-007 (1)    Ensembl 1014
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM nop56 No data available
    MARKER RELATIONSHIPS
    nop56 Contained in: [BAC] CH211-260M19 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_201217 (1) 1610 nt
    Genomic GenBank:CT027620 (1) 162438 nt
    Select Tool
    Polypeptide UniProtKB:Q6DRE5 (1) 548 aa
    Sequence Information (all 26)
    ORTHOLOGY for nop56 ( Chr: 21 )
    CITATIONS (30)