ZFIN ID: ZDB-GENE-031125-3
Gene Name: RNA binding motif protein 19
Gene Symbol: rbm19    Nomenclature History

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Previous Names: nil per os, npo (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 6 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Involved in digestive tract morphogenesis. Predicted to localize to the nuclear speck and nucleolus. Is expressed in brain and digestive system. Orthologous to human RBM19 (RNA binding motif protein 19).
Genome Resources: Alliance (1),  Gene:387255 (1),  Ensembl(GRCz11):ENSDARG00000042590 (1)
GENE EXPRESSION
All Expression Data: 3 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6906187]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
fw07g Point Mutation Unknown Premature Stop ENU
hi2329aTg Transgenic Insertion Intron 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la015935Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la015936Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20801 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa26817 Point Mutation Unknown Premature Stop ENU
    sa33947 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40776 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-rbm19 N/A 1
    DISEASE ASSOCIATED WITH rbm19 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rbm19 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process digestive tract morphogenesis (more)
    Cellular Component nuclear speck (more)
    Molecular Function RNA binding (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000504 RNA recognition motif domain
    Domain IPR003954 RNA recognition motif domain, eukaryote
    Domain IPR034417 Probable RNA-binding protein 19, RNA recognition motif 2
    Domain IPR034418 Probable RNA-binding protein 19, RNA recognition motif 1
    Domain IPR034419 Probable RNA-binding protein 19, RNA recognition motif 3
    Domain IPR034420 Probable RNA-binding protein 19, RNA recognition motif 4
    Domain IPR034421 Probable RNA-binding protein 19, RNA recognition motif 6
    Domain IPR034423 Probable RNA-binding protein 19, RNA recognition motif 5
    Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    Homologous_superfamily IPR035979 RNA-binding domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rbm19-201 (1)    Ensembl 3245
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rbm19 No data available
    MARKER RELATIONSHIPS
    rbm19 Contained in: [BAC] CH73-312E21 (1), CH211-230C4 (1)
    rbm19 Encodes: [EST] IMAGE:6906187 (1)
    [cDNA] MGC:195304 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_198915 (1) 3257 nt
    Genomic GenBank:BX323075 (1) 154270 nt
    Select Tool
    Polypeptide UniProtKB:A0A2R8QGL1 (1) 927 aa
    Sequence Information (all 31)
    ORTHOLOGY for rbm19 ( Chr: 6 )
    CITATIONS (31)