Gene

ssrp1a

ID

ZDB-GENE-031118-9

Name

structure specific recognition protein 1a

Symbol

ssrp1a Nomenclature History

Previous Names

ssrp1
wu:fa11b03
wu:fd10f06

Type

protein_coding_gene

Location

Chr: 14 Mapping Details/Browsers

Description

Predicted to have histone binding activity and nucleosome binding activity. Involved in regulation of cell cycle. Predicted to localize to FACT complex and nuclear chromatin. Is expressed in eye; liver; and pectoral fin. Orthologous to human SSRP1 (structure specific recognition protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

MGC:66086 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 6 figures from Koltowska et al., 2013
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ssrp1a Human Ortholog

No data available

Associated With ssrp1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR009071	High mobility group box domain
Domain	IPR013719	Domain of unknown function DUF1747
Domain	IPR024954	SSRP1 domain
Domain	IPR035417	FACT complex subunit POB3-like, N-terminal PH domain
Family	IPR000969	Structure-specific recognition protein
Homologous_superfamily	IPR011993	PH-like domain superfamily
Homologous_superfamily	IPR036910	High mobility group box domain superfamily
Homologous_superfamily	IPR038167	SSRP1 domain superfamily

Domain Details Per Protein

Protein	Length	Domain of unknown function DUF1747	FACT complex subunit POB3-like, N-terminal PH domain	High mobility group box domain	High mobility group box domain superfamily	PH-like domain superfamily	SSRP1 domain	SSRP1 domain superfamily	Structure-specific recognition protein
UniProtKB:A0A2R8QK93 InterPro	774
UniProtKB:Q7SZP7 InterPro	518
UniProtKB:F1QEB4 InterPro	705
UniProtKB:A0A0J9YJJ9 InterPro	75
UniProtKB:A0A2R8RPN8 InterPro	538

Transcripts

Genome Browsers

Type	Name	Length (nt)	Analysis
mRNA	ssrp1a-201 (1) Ensembl	2593 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	ssrp1a-202 (1) Ensembl	561 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations