Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-031118-14
Gene Name: alkylglycerone phosphate synthase
Gene Symbol: agps
Previous Names: fd16e06, wu:fd16e06, zgc:56718
Location: Chr: 9   Details
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56718]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  unspecified
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Alleles: sa13105, sa14227, sa21415
PHENOTYPE
Phenotype of Human Orthologue OMIM Phenotype ID
Rhizomelic chondrodysplasia punctata, type 3 600121
GENE ONTOLOGY
Ontology GO Term
Biological Process lipid biosynthetic process (more)
Molecular Function UDP-N-acetylmuramate dehydrogenase activity (more)
GO Terms (all 8)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR004113 (1)
  • InterPro:IPR006094 (1)
  • InterPro:IPR016164 (1)
  • InterPro:IPR016166 (1)
  • InterPro:IPR016167 (1)
  • InterPro:IPR016169 (1)
  • InterPro:IPR025650 (1)
  • PROSITE:PS51387 (1)
  • Pfam:PF01565 (1)
  • Pfam:PF02913 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA agps-001 (1) 777
    agps-002 (1) 346
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    CONSTRUCTS WITH SEQUENCES FROM agps No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    agps Contained in: [BAC] CH73-33M9 (1) (order this)
    [Fosmid] CH1073-172F18 (1) (order this)
    agps Encodes: [EST] fd16e06
    [cDNA] MGC:56718 (1) (order this), MGC:192039 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200113 (1) 2091 bp
    Genomic GenBank:CU104712 (1) 25607 bp
    Select Tool
    Polypeptide UniProtKB:F1QC72 (1) 629 aa
    Sequence Clusters UniGene:78669 (1)
    Sequence Information (all 23)
    OTHER agps GENE PAGES
  • Gene:386801 (1)
  • VEGA:OTTDARG00000038204 (1)
  • Ensembl(Zv9):ENSDARG00000042821 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish agps 9  
    Human AGPS 2 (2q31.2)
  • OMIM:603051
  • Gene:8540
  • Orthology Details
    CITATIONS (13)