ZFIN ID: ZDB-GENE-031118-14
Gene Name: alkylglycerone phosphate synthase
Gene Symbol: agps
Previous Names: fd16e06, wu:fd16e06, zgc:56718
Location: Chr: 9   Details
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56718]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  unspecified
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Alleles: sa13105, sa14227, sa21415
PHENOTYPE
Phenotype of Human Orthologue OMIM Phenotype ID
Rhizomelic chondrodysplasia punctata, type 3 600121
GENE ONTOLOGY
Ontology GO Term
Biological Process lipid biosynthetic process (more)
Molecular Function UDP-N-acetylmuramate dehydrogenase activity (more)
GO Terms (all 8)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR004113 (1)
  • InterPro:IPR006094 (1)
  • InterPro:IPR016164 (1)
  • InterPro:IPR016166 (1)
  • InterPro:IPR016167 (1)
  • InterPro:IPR016169 (1)
  • InterPro:IPR025650 (1)
  • PROSITE:PS51387 (1)
  • Pfam:PF01565 (1)
  • Pfam:PF02913 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA agps-001 (1) 777
    agps-002 (1) 346
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM agps No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    agps Contained in: [BAC] CH73-33M9 (1) (order this)
    [Fosmid] CH1073-172F18 (1) (order this)
    agps Encodes: [EST] fd16e06
    [cDNA] MGC:56718 (1) (order this), MGC:192039 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200113 (1) 2091 bp
    Genomic GenBank:CU104712 (1) 25607 bp
    Select Tool
    Polypeptide UniProtKB:F1QC72 (1) 629 aa
    Sequence Clusters UniGene:78669 (1)
    Sequence Information (all 23)
    OTHER agps GENE PAGES
  • Gene:386801 (1)
  • VEGA:OTTDARG00000038204 (1)
  • Ensembl(Zv9):ENSDARG00000042821 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish agps 9  
    Human AGPS 2 (2q31.2)
  • OMIM:603051
  • Gene:8540
  • Orthology Details
    CITATIONS (13)