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ZIRC
ZFIN ID: ZDB-GENE-030926-1
Gene Name: vacuolar protein sorting 13 homolog A
Gene Symbol: vps13a
Sequence Ontology ID : SO:0000704

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Previous Names: chac (1), wu:fc10c04

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in autophagy; protein retention in Golgi apparatus; and protein targeting to vacuole. Predicted to localize to the extrinsic component of membrane. Human ortholog(s) of this  ...
GENE EXPRESSION
All Expression Data: text only from Hoshijima et al., 2002
Wild-type Stages, Structures: Gastrula:Bud (10.0h-10.33h) to Gastrula:Bud (10.0h-10.33h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa731 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa771 Point Mutation Unknown Premature Stop ENU
    sa8566 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa8612 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa8672 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16081 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21397 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21398 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34513 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34514 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41307 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41308 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH vps13a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    choreaacanthocytosis Choreoacanthocytosis 200150
    DISEASE ASSOCIATED WITH vps13a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process autophagy (more)
    Cellular Component extrinsic component of membrane (more)
    GO Terms (all 4)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA vps13a-201 (1) 10224
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM vps13a No data available
    MARKER RELATIONSHIPS
    vps13aContained in: [BAC] CH211-155H12 (1) (order this)
    vps13aContains: [SNP] rs3728195, rs3728196, rs3728197, rs3728198, rs3728199, rs3728200, rs3728201, rs3728202, rs3728203, rs3728204, rs3728205
    vps13aEncodes: [EST] fc10c04
    [cDNA] MGC:194617 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001118893 (1) 10109bp
    Genomic GenBank:BX005248 (1) 185135bp
    Select Tool
    Polypeptide UniProtKB:F1QJI4 (1) 3217aa
    Sequence Clusters UniGene:19565 (1)
    Sequence Information (all 20)
    ORTHOLOGY for vps13a (Chr: 8)
    CITATIONS (17)