ZFIN ID: ZDB-GENE-030926-1
Gene Name: vacuolar protein sorting 13 homolog A
Gene Symbol: vps13a    Nomenclature History

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Previous Names: chac (1), wu:fc10c04

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 8 Mapping Details/Browsers
Description: Predicted to be involved in autophagy; protein retention in Golgi apparatus; and protein targeting to vacuole. Predicted to localize to extrinsic component of membrane. Human ortholog(s) of this gene implicated in choreaacanthocytosis and choreatic disease. Orthologous to human VPS13A (vacuolar protein sorting 13 homolog A).
Genome Resources: Alliance (1),  Gene:378837 (1),  Ensembl(GRCz11):ENSDARG00000039225 (2)
GENE EXPRESSION
All Expression Data: text only from Hoshijima et al., 2002
Wild-type Stages, Structures: Gastrula:Bud (10.0h-10.33h) to Gastrula:Bud (10.0h-10.33h)
 
High Throughput Expression: Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa731 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa771 Point Mutation Unknown Premature Stop ENU
    sa8566 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa8612 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa8672 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16081 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21397 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21398 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34513 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34514 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41307 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41308 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH vps13a HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    choreaacanthocytosis Alliance Choreoacanthocytosis 200150
    DISEASE ASSOCIATED WITH vps13a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process autophagy (more)
    Cellular Component extrinsic component of membrane (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA vps13a-201 (1)    Ensembl 10224
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM vps13a No data available
    MARKER RELATIONSHIPS
    vps13a Contained in: [BAC] CH211-155H12 (1)
    vps13a Contains: [SNP] rs3728195, rs3728196, rs3728197, rs3728198, rs3728199, rs3728200, rs3728201, rs3728202, rs3728203, rs3728204, rs3728205
    vps13a Encodes: [EST] fc10c04
    [cDNA] MGC:194617 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001118893 (1) 10109 nt
    Genomic GenBank:BX005248 (1) 185135 nt
    Select Tool
    Polypeptide UniProtKB:F1QJI4 (1) 3217 aa
    Sequence Information (all 19)
    ORTHOLOGY for vps13a ( Chr: 8 )
    CITATIONS (19)