ZFIN ID: ZDB-GENE-030721-4
Gene Name: protocadherin 10b
Gene Symbol: pcdh10b
Sequence Ontology ID : SO:0000704

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Previous Name: wu:fq16b02

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(Including Attributions)
Location: Chr: 14 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have calcium ion binding activity; involved in paraxial mesoderm development, somitogenesis, and thalamus development; predicted to localize to the integral component of plasma membrane;  ...
GENE EXPRESSION
All Expression Data: 25 figures from 7 publications
Directly Submitted Expression Data: 6 figures (28 images) from Thisse et al., 2005 [eu710]
  12 figures (40 images) from Rauch et al., 2003 [fq16b02]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
PHENOTYPE
Data: Fig. 6 from Peukert et al., 2011
Observed in:
DISEASE ASSOCIATED WITH pcdh10b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH pcdh10b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process paraxial mesoderm development (more)
Cellular Component integral component of membrane (more)
Molecular Function calcium ion binding (more)
GO Terms (all 11)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002126 (1)
  • InterPro:IPR013164 (1)
  • InterPro:IPR015919 (1)
  • InterPro:IPR020894 (1)
  • InterPro:IPR030712 (1)
  • InterPro:IPR032455 (1)
  • PROSITE:PS00232 (1)
  • Pfam:PF00028 (1)
  • Pfam:PF08266 (1)
  • Pfam:PF16492 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA pcdh10b-201 (1) 4672
    pcdh10b-202 (1) 447
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pcdh10b No data available
    MARKER RELATIONSHIPS
    pcdh10bContained in: [BAC] DKEY-148J13 (order this), DKEY-216J10 (1) (order this)
    pcdh10bEncodes: [EST] eu710 (1), fq16b02 (1) (order this)
    [cDNA] MGC:85860 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_182885 (1) 4743bp
    Genomic GenBank:CR954249 (1) 221587bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6IS19 (1) 1026aa
    Sequence Clusters UniGene:82621 (1)
    Sequence Information (all 26)
    OTHER pcdh10b GENE PAGES
  • Alliance (1)
  • Gene:360138 (1)
  • VEGA:OTTDARG00000043284 (1)
  • Ensembl(GRCz11):ENSDARG00000102824 (1)
  • ORTHOLOGY for pcdh10b (Chr: 14)
    CITATIONS (34)