ZFIN ID: ZDB-GENE-030721-1
Gene Name: chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1)
Gene Symbol: cxcl12b
Sequence Ontology ID : SO:0000704

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Previous Names: SDF-1b (2), SDF1b (1), zgc:136720

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(Including Attributions)
Location: Chr: 22 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
All Expression Data: 37 figures from 20 publications
Directly Submitted Expression Data: 6 figures (14 images) from Thisse et al., 2005 [eu806]
  6 figures (17 images) from Thisse et al., 2005 [eu815]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
mu100 Indel Exon 2 Frameshift, Premature Stop
sa1516 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14394 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa24194 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa37534 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 10 figures from 7 publications
    Observed in:
    DISEASE ASSOCIATED WITH cxcl12b HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    acquired immunodeficiency syndrome {AIDS, resistance to} 609423
    DISEASE ASSOCIATED WITH cxcl12b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cell migration involved in gastrulation (more)
    Cellular Component extracellular region (more)
    Molecular Function chemoattractant activity (more)
    GO Terms (all 22)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001811 (1)
  • InterPro:IPR033899 (1)
  • InterPro:IPR036048 (1)
  • InterPro:IPR039813 (1)
  • Pfam:PF00048 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cxcl12b-001 (1) 2844
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM cxcl12b
    MARKER RELATIONSHIPS
    cxcl12bContained in: [BAC] DKEY-44G23 (1) (order this)
    cxcl12bEncodes: [EST] eu806 (1), eu815 (1)
    [cDNA] MGC:136720 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_198068 (1) 3266bp
    Genomic GenBank:AL953841 (1) 219929bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6V9B5 (1) 97aa
    Sequence Clusters UniGene:27045 (1)
    Sequence Information (all 26)
    OTHER cxcl12b GENE PAGES
  • Alliance (1)
  • Gene:799354 (1)
  • VEGA:OTTDARG00000010661 (1)
  • ORTHOLOGY for cxcl12b (Chr: 22)
    CITATIONS (95)