ZFIN is now using GRCz12tu for Genomic Data

Gene

znf536

ID

ZDB-GENE-030616-624

Name

zinc finger protein 536

Symbol

znf536 Nomenclature History

Previous Names

si:ch211-116i17.2
si:ch211-139o14.1
si:ch211-225j17.1 (1)
si:zc225j17.1

Type

protein_coding_gene

Location

Chr: 7 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be active in nucleus. Is expressed in nervous system; neural tube; and otic vesicle. Orthologous to human ZNF536 (zinc finger protein 536).

Genome Resources

Note

novel zinc finger protein

Comparative Information

Expression

All Expression Data

18 figures from 4 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

eu667 (11 images)
eu1111 (14 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 11 figures from 2 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With znf536 Human Ortholog

No data available

Associated With znf536 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR013087	Zinc finger C2H2-type
Family	IPR051967	Krueppel C2H2-type Zinc-Finger Domain-Containing Protein
Homologous_superfamily	IPR036236	Zinc finger C2H2 superfamily

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M9PZB3	InterPro	579
UniProtKB:A0A8M3AUG1	InterPro	1485
UniProtKB:A0A8M2BDX3	InterPro	1455
UniProtKB:A0A0R4IA51	InterPro	1430

Transcripts

Genome Browsers

NCBI Map Viewer

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	znf536-203 (1) Ensembl	Ensembl	6,956 nt	Select Tool ZFIN BLAST
mRNA	znf536-204 (1) Ensembl	Ensembl	4,486 nt	Select Tool ZFIN BLAST
mRNA	znf536-205 (1) Ensembl	Ensembl	4,353 nt	Select Tool ZFIN BLAST
mRNA	znf536-206 (1) Ensembl	Ensembl	4,556 nt	Select Tool ZFIN BLAST
ncRNA	znf536-002 (1) Ensembl	Ensembl	224 nt	Select Tool ZFIN BLAST
ncRNA	znf536-003 (1) Ensembl	Ensembl	316 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Genome Browsers

NCBI Map Viewer

ZFIN

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations