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ZIRC
ZFIN ID: ZDB-GENE-030616-420
Gene Name: PRP39 pre-mRNA processing factor 39 homolog (yeast)
Gene Symbol: prpf39
Sequence Ontology ID : SO:0000704

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Previous Names: fa10d07, si:dz261o22.3, wu:fa10d07

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(Including Attributions)
Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to contribute to pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to localize to the U1 snRNP; U2-type prespliceosome; and  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2005 [eu1074]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH prpf39 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH prpf39 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA processing (more)
Cellular Component nucleus (more)
Molecular Function CONTRIBUTES_TO pre-mRNA 5'-splice site binding (more)
GO Terms (all 9)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003107 (1)
  • InterPro:IPR011990 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA prpf39-001 (1) 2588
    aberrant processed transcript prpf39-002 (1) 2933
    ncRNA prpf39-003 (1) 960
    prpf39-004 (1) 643
    prpf39-005 (1) 879
    prpf39-006 (1) 893
    prpf39-007 (1) 685
    mRNA prpf39-201 (1) 2584
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM prpf39 No data available
    MARKER RELATIONSHIPS
    prpf39Contained in: [Fosmid] ZFOS-1053B4 (1), ZFOS-2171E4 (1)
    [PAC] BUSM1-261O22 (1) (order this)
    prpf39Encodes: [EST] eu1074 (1)
    [cDNA] MGC:136443 (1) (order this)
    prpf39Has Artifact: [EST] fa10d07
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001004520 (1) 2588bp
    Genomic GenBank:AL591492 (1) 92083bp
    Select Tool
    Polypeptide UniProtKB:Q1JPZ7 (1) 752aa
    Sequence Clusters UniGene:340 (1)
    Sequence Information (all 22)
    ORTHOLOGY for prpf39 (Chr: 20)
    CITATIONS (21)