ZFIN ID: ZDB-GENE-030616-40
Gene Name: matrin 3-like 1.1
Gene Symbol: matr3l1.1    Nomenclature History

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Previous Names: matr3l, si:bz1d10.2, wu:fb78d04, wu:fc09f04, wu:fe36a04

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 14 Mapping Details/Browsers
Description: Predicted to have RNA binding activity and zinc ion binding activity. Predicted to localize to the nucleus. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 21. Orthologous to human MATR3 (matrin 3).
Genome Resources: Alliance (1), 
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7159626]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la018896Tg Transgenic Insertion Unknown Unknown DNA
sa9639 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa22477 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH matr3l1.1 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    amyotrophic lateral sclerosis type 21 Alliance Amyotrophic lateral sclerosis 21 606070
    DISEASE ASSOCIATED WITH matr3l1.1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of translation (more)
    Cellular Component nucleus (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000504 RNA recognition motif domain
    Domain IPR000690 Matrin/U1-C, C2H2-type zinc finger
    Domain IPR003604 Matrin/U1-C-like, C2H2-type zinc finger
    Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    Domain IPR034928 Matrin-3, RNA recognition motif 1
    Domain IPR034930 Matrin-3, RNA recognition motif 2
    Homologous_superfamily IPR035979 RNA-binding domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA matr3l1.1-204 (1)    Ensembl 3195
    matr3l1.1-205 (1)    Ensembl 5057
    matr3l1.1-206 (1)    Ensembl 5193
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM matr3l1.1 No data available
    MARKER RELATIONSHIPS
    matr3l1.1 Contained in: [BAC] RP71-1D10 (1)
    matr3l1.1 Contains: [SNP] rs3728646 (1), rs3728647 (1), rs3728648 (1), rs3728649 (1), rs3728650 (1), rs3728651 (1), rs3728652 (1), rs3728653 (1)
    matr3l1.1 Encodes: [EST] fb78d04, fc09f04, fe36a04, IMAGE:7159626 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA GenBank:CK694890 (1) 676 bp
    Genomic GenBank:AL645792 (1) 170221 bp
    Select Tool
    Polypeptide UniProtKB:Q800H6 (1) 1155 aa
    Sequence Information (all 14)
    ORTHOLOGY for matr3l1.1 ( Chr: 14 )
    CITATIONS (23)