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ZIRC
ZFIN ID: ZDB-GENE-030616-318
Gene Name: si:busm1-194e12.11
Gene Symbol: si:busm1-194e12.11
Sequence Ontology ID : SO:0000704

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Previous Name: si:dz194e12.11

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
Note: novel MHCII alpha chain protein
AUTOMATED DESCRIPTION
Predicted to be involved in antigen processing and presentation and immune response. Predicted to localize to the MHC class II protein complex and integral component of membrane.

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:113851]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH si:busm1-194e12.11 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH si:busm1-194e12.11 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process antigen processing and presentation (more)
Cellular Component integral component of membrane (more)
GO Terms (all 5)
TRANSCRIPTS
Type Name Length (bp) Analysis
mRNA si:busm1-194e12.11-001 (1) 718
GENE PRODUCT DESCRIPTION No description available
INTERACTIONS AND PATHWAYS
ANTIBODIESNo data available
PLASMIDSNo data available
CONSTRUCTS WITH SEQUENCES FROM si:busm1-194e12.11 No data available
MARKER RELATIONSHIPS
si:busm1-194e12.11Contained in: [PAC] BUSM1-194E12 (1) (order this)
si:busm1-194e12.11Encodes: [cDNA] MGC:113851 (1) (order this), MGC:192518 (1) (order this)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001007205 (1) 755bp
Genomic GenBank:AL591210 (1) 118527bp
Select Tool
Polypeptide UniProtKB:Q7ZYW2 (1) 236aa
Sequence Clusters UniGene:80817 (1)
Sequence Information (all 15)
OTHER si:busm1-194e12.11 GENE PAGES
  • Alliance (1)
  • Gene:368614 (1)
  • VEGA:OTTDARG00000001665 (1)
  • Ensembl(GRCz11):ENSDARG00000103716 (1)
  • ORTHOLOGY for si:busm1-194e12.11 (Chr: 8)
    CITATIONS (12)