ZFIN ID: ZDB-GENE-030616-13
Gene Name: collagen, type V, alpha 2a
Gene Symbol: col5a2a
Sequence Ontology ID : SO:0000704

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Previous Names: col5a2l, im:7038599, si:by143e18.1, si:ch211-198b21.5, si:dz167c3.3, wu:fa13f03, wu:fa98d01, wu:fj05e03

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(Including Attributions)
Location: Chr: 9 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
All Expression Data: 22 figures from 6 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7146646]
  12 figures (16 images) from Rauch et al., 2003 [fb19e04]
  6 figures (14 images) from Thisse et al., 2005 [eu144]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Days 7-13 (168.0h-14d, 4.5mm, 8 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa657 Point Mutation Unknown Splice Site ENU
sa7207 Point Mutation Unknown Splice Site ENU
sa7208 Point Mutation Unknown Splice Site ENU
sa8629 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11735 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa13316 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa13820 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14075 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16186 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21557 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31741 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34725 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa44710 Point Mutation Unknown Unknown ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH col5a2a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Ehlers-Danlos syndrome, classic type, 2 130010
    Ehlers-Danlos syndrome, classic type, 2 130010
    DISEASE ASSOCIATED WITH col5a2a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Molecular Function extracellular matrix structural constituent (more)
    GO Terms (all 1)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000885 (1)
  • InterPro:IPR001007 (1)
  • InterPro:IPR008160 (1)
  • PROSITE:PS01208 (1)
  • PROSITE:PS50184 (1)
  • PROSITE:PS51461 (1)
  • Pfam:PF00093 (1)
  • Pfam:PF01391 (1)
  • Pfam:PF01410 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col5a2a-001 (1) 4276
    ncRNA col5a2a-002 (1) 984
    mRNA ottdart00000034499 (1) 5063
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM col5a2a No data available
    MARKER RELATIONSHIPS
    col5a2aContained in: [BAC] CH211-198B21 (1) (order this), IZAB-143E18 (1)
    [PAC] BUSM1-167C3 (order this)
    col5a2aEncodes: [EST] eu144 (1), fa13f03, fa98d01, fb19e04 (1) (order this), fj05e03, IMAGE:7038599, IMAGE:7146646 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA GenBank:CK684217 835bp
    Genomic GenBank:BX640465 (1) 214459bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1QT86 (1) 1521aa
    Sequence Information (all 12)
    OTHER col5a2a GENE PAGES
  • Alliance (1)
  • VEGA:OTTDARG00000001844 (1)
  • VEGA:OTTDARG00000026069 (1)
  • Ensembl(GRCz11):ENSDARG00000031678 (2)
  • ORTHOLOGY for col5a2a (Chr: 9)
    CITATIONS (20)