ZFIN ID: ZDB-GENE-030502-1
Gene Name: melanocortin 1 receptor
Gene Symbol: mc1r
Sequence Ontology ID : SO:0000704

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(Including Attributions)
Location: Chr: 18 Mapping Details/Browsers
GENE EXPRESSION
All Expression Data: 6 figures from 6 publications
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Adult (90d-730d, breeding adult)
  brain, eye, female organism, head kidney (all 10) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents: MO1-mc1r (1), MO2-mc1r (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH mc1r HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
oculocutaneous albinism {Albinism, oculocutaneous, type II, modifier of} 203200
skin melanoma {Melanoma, cutaneous malignant, 5} 613099
{UV-induced skin damage} 266300
[Skin/hair/eye pigmentation 2, red hair/fair skin] 266300
[Analgesia from kappa-opioid receptor agonist, female-specific] 613098
[Skin/hair/eye pigmentation 2, blond hair/fair skin] 266300
GENE ONTOLOGY
Ontology GO Term
Biological Process G-protein coupled receptor signaling pathway (more)
Cellular Component plasma membrane (more)
Molecular Function protein binding (more)
GO Terms (all 10)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000276 (1)
  • InterPro:IPR000761 (1)
  • InterPro:IPR001671 (1)
  • InterPro:IPR017452 (1)
  • PROSITE:PS00237 (1)
  • PROSITE:PS50262 (1)
  • Pfam:PF00001 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA mc1r-001 (1) 1328
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM mc1r No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    mc1rContained in: [BAC] CH211-132F3 (1) (order this)
    mc1rEncodes: [cDNA] MGC:194185 (1) (order this), MGC:194219 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_180970 (1) 972bp
    Genomic GenBank:CR457484 (1) 169672bp
    Select Tool
    Polypeptide UniProtKB:Q7ZTA3 (1) 323aa
    Sequence Clusters UniGene:87354 (1)
    Sequence Information (all 22)
    OTHER mc1r GENE PAGES
  • Gene:353151 (1)
  • VEGA:OTTDARG00000017786 (1)
  • Ensembl(GRCz10):ENSDARG00000020237 (1)
  • ORTHOLOGY for mc1r (Chr: 18)
    CITATIONS (29)