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General Information
ZIRC
ZFIN ID: ZDB-GENE-030408-3
Gene Name: neuronal PAS domain protein 2
Gene Symbol: npas2
Sequence Ontology ID : SO:0000704

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Previous Names: clock2, zfCLOCK2 (1)

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
AUTOMATED DESCRIPTION
Contributes to double-stranded DNA binding activity. Involved in circadian rhythm and photoperiodism. Localizes to the transcription factor complex. Orthologous to human NPAS2 (neuronal PAS domain  ...
GENE EXPRESSION
All Expression Data: 3 figures from 3 publications
Wild-type Stages, Structures: Gastrula:Shield (6.0h-8.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa20391 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa26455 Point Mutation Unknown Splice Site ENU
    sa33580 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38465 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH npas2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH npas2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process circadian rhythm (more)
    Cellular Component transcription factor complex (more)
    Molecular Function CONTRIBUTES_TO double-stranded DNA binding (more)
    GO Terms (all 11)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA npas2-201 (1) 2683
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM npas2 No data available
    MARKER RELATIONSHIPS
    npas2Contained in: [BAC] CH211-26B3 (1) (order this)
    npas2Encodes: [cDNA] MGC:194560 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_178299 (1) 2538bp
    Genomic GenBank:CU464080 (1) 166781bp
    Select Tool
    Polypeptide UniProtKB:Q8JIG3 (1) 845aa
    Sequence Clusters UniGene:24959 (1)
    Sequence Information (all 17)
    ORTHOLOGY for npas2 (Chr: 5)
    CITATIONS (34)