ZFIN ID: ZDB-GENE-030408-1
Gene Name: aryl hydrocarbon receptor nuclear translocator-like 1b
Gene Symbol: arntl1b    Nomenclature History

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Previous Names: bmal1b, zfBMAL3 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 7 Mapping Details/Browsers
Description: Exhibits chromatin binding activity. Contributes to DNA binding activity. Involved in photoperiodism and positive regulation of gene expression. Localizes to chromatin and transcription regulator complex. Is expressed in brain; heart; liver; muscle; and retina. Orthologous to human ARNTL (aryl hydrocarbon receptor nuclear translocator like).
Genome Resources: Alliance (1),  Gene:352935 (1),  Ensembl(GRCz11):ENSDARG00000035732 (1)
GENE EXPRESSION
All Expression Data: 8 figures from 6 publications
Wild-type Stages, Structures: Larval:Day 4 (96.0h-120.0h) to Adult (90d-730d, breeding adult)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ct804 Indel Unknown Unknown ZINC_FINGER_NUCLEASE
la026242Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa1146 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH arntl1b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH arntl1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process positive regulation of gene expression (more)
    Cellular Component chromatin (more)
    Molecular Function chromatin binding (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA arntl1b-201 (1)    Ensembl 2400
    arntl1b-203 (1)    Ensembl 1869
    ncRNA arntl1b-003 (1)    Ensembl 1210
    arntl1b-004 (1)    Ensembl 815
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM arntl1b
    Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
    Tg(-1.7arntl1b:Luciferase) arntl1b Luciferase Danio rerio 2 2
    Tg2(-1.7arntl1b:Luciferase) arntl1b Luciferase Danio rerio 2 2
    MARKER RELATIONSHIPS
    arntl1b Contained in: [BAC] CH211-159M16 (1)
    arntl1b Encodes: [cDNA] MGC:162117 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_178300 (1) 1869 nt
    Genomic GenBank:CR318647 (1) 174689 nt
    Select Tool
    Polypeptide UniProtKB:A4IG25 (1) 645 aa
    Sequence Information (all 20)
    ORTHOLOGY for arntl1b ( Chr: 7 )
    CITATIONS (63)