ZFIN ID: ZDB-GENE-030219-38
Gene Name: COPI coat complex subunit beta 1
Gene Symbol: copb1    Nomenclature History

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Previous Names: hap, happy, id:ibd5034, wu:fc66c05, zgc:92482

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 7 Mapping Details/Browsers
Description: Predicted to have structural molecule activity. Involved in notochord development and somite development. Predicted to localize to COPI vesicle coat. Is expressed in axis; brain; neural rod; and notochord. Orthologous to human COPB1 (COPI coat complex subunit beta 1).
Genome Resources: Alliance (1),  Gene:338138 (1),  Ensembl(GRCz11):ENSDARG00000056557 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 2 figures (3 images) from Kudoh et al., 2001 [ibd5034]
  6 figures (9 images) from Thisse et al., 2004 [IMAGE:7150894]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la025944Tg Transgenic Insertion Unknown Unknown DNA
sa20952 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34079 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34080 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • tc229 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • te239 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tk56a Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tm285 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tr278 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • ty230 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-copb1 N/A 1
    DISEASE ASSOCIATED WITH copb1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH copb1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process notochord development (more)
    Cellular Component COPI vesicle coat (more)
    Molecular Function structural molecule activity (more)
    GO Terms (all 15)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA copb1-201 (1)    Ensembl 4040
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM copb1 No data available
    MARKER RELATIONSHIPS
    copb1 Contained in: [BAC] CH211-77A11 (1)
    copb1 Encodes: [EST] fc66c05 (1), ibd5034, IMAGE:7150894 (1)
    [cDNA] MGC:92482 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001002013 (1) 3239 nt
    Genomic GenBank:BX005056 (1) 173708 nt
    Select Tool
    Polypeptide UniProtKB:Q66HV4 (1) 953 aa
    Sequence Information (all 14)
    ORTHOLOGY for copb1 ( Chr: 7 )
    CITATIONS (37)