Gene

lrrfip1a

ID

ZDB-GENE-030131-99

Name

leucine rich repeat (in FLII) interacting protein 1a

Symbol

lrrfip1a Nomenclature History

Previous Names

lrrfip1 (1)
hm:zeh1367
wu:fc06b04
wu:fi15c07
zeh1367

Type

protein_coding_gene

Location

Chr: 9 Mapping Details/Browsers

Description

Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in adaxial cell; cardiovascular system; musculature system; retina; and somite. Orthologous to human LRRFIP1 (LRR binding FLII interacting protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

Thisse Expression Data

IMAGE:7150904 (9 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lrrfip1a Human Ortholog

No data available

Associated With lrrfip1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR019139	Leucine-rich repeat flightless-interacting protein 1/2

Domain Details Per Protein

Protein	Length	Leucine-rich repeat flightless-interacting protein 1/2
UniProtKB:Q4V8Z2 InterPro	541
UniProtKB:G1K2J1 InterPro	244
UniProtKB:A0A0R4IUM2 InterPro	118
UniProtKB:Q6NWK0 InterPro	398
UniProtKB:Q568I0 InterPro	391
UniProtKB:A0A0R4IBX6 InterPro	178
UniProtKB:H0WEN2 InterPro	203
UniProtKB:F1QDT9 InterPro	487
UniProtKB:A3KNI5 InterPro	443
UniProtKB:A0A0R4IXG0 InterPro	82
UniProtKB:Q08CS2 InterPro	440
UniProtKB:H1A5Y8 InterPro	1168
UniProtKB:A9JR77 InterPro	488
UniProtKB:F1QI65 InterPro	446
UniProtKB:A0A0R4IL11 InterPro	539
UniProtKB:F1QGV4 InterPro	1177

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Length (nt)	Analysis
mRNA	lrrfip1a-202 (1) Ensembl	1810 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	lrrfip1a-203 (1) Ensembl	1741 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	lrrfip1a-204 (1) Ensembl	1933 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	lrrfip1a-205 (1) Ensembl	4456 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	lrrfip1a-206 (1) Ensembl	3554 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	lrrfip1a-207 (1) Ensembl	607 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	lrrfip1a-208 (1) Ensembl	1004 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	lrrfip1a-211 (1) Ensembl	717 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	lrrfip1a-212 (1) Ensembl	824 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	lrrfip1a-005 (1) Ensembl	882 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	lrrfip1a-008 (1) Ensembl	413 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations