ZFIN ID: ZDB-GENE-030131-9830
Gene Name: WD repeat domain 3
Gene Symbol: wdr3
Sequence Ontology ID : SO:0000704

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Previous Names: sb:cb42, wu:fb92b07

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(Including Attributions)
Location: Chr: 9 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have snoRNA binding activity; predicted to localize to the Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome; orthologous to human WDR3 (WD repeat domain 3).
GENE EXPRESSION
All Expression Data: 8 figures from 3 publications
Directly Submitted Expression Data: 6 figures (11 images) from Thisse et al., 2004 [MGC:66230]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH wdr3 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH wdr3 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (more)
Cellular Component Pwp2p-containing subcomplex of 90S preribosome (more)
Molecular Function snoRNA binding (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001680 (1)
  • InterPro:IPR007148 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR017986 (1)
  • InterPro:IPR019775 (1)
  • InterPro:IPR020472 (1)
  • InterPro:IPR024977 (1)
  • PROSITE:PS00678 (1)
  • PROSITE:PS50082 (1)
  • PROSITE:PS50294 (1)
  • Pfam:PF00400 (1)
  • Pfam:PF04003 (1)
  • Pfam:PF12894 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA wdr3-002 (1) 560
    wdr3-003 (1) 813
    wdr3-004 (1) 734
    mRNA wdr3-201 (1) 3058
    wdr3-205 (1) 401
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM wdr3 No data available
    MARKER RELATIONSHIPS
    wdr3Contained in: [BAC] DKEY-103G22 (1) (order this), DKEY-207C6 (1) (order this)
    wdr3Encodes: [EST] fb92b07
    [cDNA] MGC:66230 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_198873 (1) 3061bp
    Genomic GenBank:BX470145 (1) 121951bp
    Select Tool
    Polypeptide UniProtKB:B0S6A9 (1) 938aa
    Sequence Clusters UniGene:132361 (1)
    Sequence Information (all 15)
    OTHER wdr3 GENE PAGES
  • Alliance (1)
  • Gene:321058 (1)
  • VEGA:OTTDARG00000020432 (1)
  • Ensembl(GRCz11):ENSDARG00000011079 (2)
  • ORTHOLOGY for wdr3 (Chr: 9)
    CITATIONS (27)