ZFIN ID: ZDB-GENE-030131-967
Gene Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Gene Symbol: smarce1
Previous Names: fb33d02, fb54d11, wu:fb33d02 (1), wu:fb54d11 (1)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55303]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  unspecified
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12524 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12565 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa20071 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33229 Point Mutation Unknown Unknown ENU
    Targeting reagents: MO1-smarce1 (1)
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH smarce1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    familial meningioma {Meningioma, familial, susceptibility to} 607174
    Coffin-Siris syndrome 5 616938
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process ATP-dependent chromatin remodeling (more)
    Cellular Component SWI/SNF complex (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR009071 (1)
  • InterPro:IPR030089 (1)
  • PROSITE:PS50118 (1)
  • Pfam:PF00505 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA smarce1-001 (1) 2072
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM smarce1 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    smarce1Contained in: [BAC] DKEY-15H19 (1) (order this)
    smarce1Encodes: [EST] fb33d02, fb54d11
    [cDNA] MGC:55303 (1) (order this), MGC:77275 (1) (order this), MGC:191900 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_201298 (1) 2062bp
    Genomic GenBank:BX890590 (1) 141661bp
    Select Tool
    Polypeptide UniProtKB:F1Q5P8 (1) 424aa
    Sequence Clusters UniGene:75920 (1)
    Sequence Information (all 26)
    OTHER smarce1 GENE PAGES
  • Gene:322248 (1)
  • VEGA:OTTDARG00000020074 (1)
  • Ensembl(GRCz10):ENSDARG00000016871 (1)
  • ORTHOLOGY for smarce1 (Chr: 3)
    Species Symbol Chromosome Accession # Evidence
    Human SMARCE1 17
  • Gene:6605
  • OMIM:603111
  • HGNC:11109
  • Amino acid sequence comparison (2)
    Conserved genome location (synteny) (2)
    Mouse Smarce1 11
  • MGI:1927347
  • Gene:57376
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Download Curated Orthology
    CITATIONS (18)