ZFIN ID: ZDB-GENE-030131-967
Gene Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Gene Symbol: smarce1
Previous Names: fb54d11, fb33d02, wu:fb33d02 (1), wu:fb54d11 (1)
Location: Chr: 3   Details
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55303]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  unspecified
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Alleles: sa12524, sa12565, sa20071
PHENOTYPE
Phenotype of Human Orthologue OMIM Phenotype ID
{Meningioma, familial, susceptibility to} 607174
GENE ONTOLOGY
Ontology GO Term
Biological Process chromatin remodeling (more)
Cellular Component nucleus (more)
Molecular Function chromatin binding (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR009071 (1)
  • PROSITE:PS50118 (1)
  • Pfam:PF00505 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA smarce1-001 (1) 2072
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM smarce1 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    smarce1 Contained in: [BAC] DKEY-15H19 (1)
    smarce1 Encodes: [EST] fb33d02, fb54d11
    [cDNA] MGC:55303 (1) (order this), MGC:77275 (1) (order this), MGC:191900 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_201298 (1) 2062 bp
    Genomic GenBank:BX890590 (1) 141661 bp
    Select Tool
    Polypeptide UniProtKB:F1Q5P8 (1) 424 aa
    Sequence Clusters UniGene:75920 (1)
    Sequence Information (all 26)
    OTHER smarce1 GENE PAGES
  • Gene:322248 (1)
  • VEGA:OTTDARG00000020074 (1)
  • Ensembl(Zv9):ENSDARG00000016871 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish smarce1 3  
    Human SMARCE1 17 (17q21.2)
  • OMIM:603111
  • Gene:6605
  • Mouse Smarce1 11 ( 62.92 cM)
  • MGI:1927347
  • Gene:57376
  • Orthology Details
    CITATIONS (14)