ZFIN ID: ZDB-GENE-030131-9260
Gene Name: CDC42 small effector 1
Gene Symbol: cdc42se1    Nomenclature History

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Previous Names: spec1 (1), wu:fa55c04, wu:fc05d06, zgc:55642

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Predicted to have Rho GTPase binding activity. Involved in midbrain-hindbrain boundary morphogenesis. Predicted to localize to plasma membrane. Orthologous to human CDC42SE1 (CDC42 small effector 1).
Genome Resources: Alliance (1),  Gene:791998 (1),  Ensembl(GRCz11):ENSDARG00000023724 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55642]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la019764Tg Transgenic Insertion Unknown Unknown DNA
la019765Tg Transgenic Insertion Unknown Unknown DNA
sa10753 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36217 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-cdc42se1 N/A 2
    MO2-cdc42se1 N/A 1
    DISEASE ASSOCIATED WITH cdc42se1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cdc42se1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process midbrain-hindbrain boundary morphogenesis (more)
    Cellular Component cytoplasm (more)
    Molecular Function Rho GTPase binding (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA cdc42se1-201 (1)    Ensembl 2158
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cdc42se1 No data available
    MARKER RELATIONSHIPS
    cdc42se1 Contained in: [BAC] DKEY-77N11 (1) (order this)
    cdc42se1 Encodes: [EST] fa55c04, fc05d06 (1)
    [cDNA] MGC:55642 (1)
    cdc42se1 Has Artifact: [cDNA] MGC:109735 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_200060 (1) 2158 nt
    Genomic GenBank:AL929190 (1) 150892 nt
    Select Tool
    Polypeptide UniProtKB:Q6TEL3 (1) 75 aa
    Sequence Information (all 21)
    ORTHOLOGY for cdc42se1 ( Chr: 16 )
    CITATIONS (33)