ZFIN ID: ZDB-GENE-030131-925
Gene Name: DEAD (Asp-Glu-Ala-Asp) box helicase 5
Gene Symbol: ddx5    Nomenclature History

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Previous Names: wu:fa56a07, wu:fb11e01, wu:fb16c10, wu:fb53b05

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have RNA binding activity and RNA helicase activity. Predicted to localize to cytoplasm; nucleus; and ribonucleoprotein complex. Orthologous to human DDX5 (DEAD-box helicase 5).
Genome Resources: Alliance (1),  Gene:322206 (1),  Ensembl(GRCz11):ENSDARG00000038068 (2)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6897305]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 6 (144.0h-168.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa15904 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20007 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ddx5 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ddx5 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    Molecular Function ATP binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA ddx5-201 (1)    Ensembl 2513
    ddx5-202 (1)    Ensembl 744
    ddx5-204 (1)    Ensembl 2230
    ncRNA ddx5-003 (1)    Ensembl 372
    ddx5-005 (1)    Ensembl 1965
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    SignaFish
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ddx5 No data available
    MARKER RELATIONSHIPS
    ddx5 Contained in: [BAC] DKEY-226A5 (1) (order this)
    ddx5 Contains: [SNP] rs3727699 (1)
    ddx5 Encodes: [EST] fa56a07 (1), fb11e01, fb16c10, fb53b05, IMAGE:6897305 (1)
    [cDNA] MGC:85704 (1), MGC:174406 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_212612 (1) 2482 nt
    Genomic GenBank:BX085195 (1) 227111 nt Blast at MegaBLAST
    Polypeptide UniProtKB:F1Q5L6 (1) 617 aa
    Sequence Information (all 28)
    ORTHOLOGY for ddx5 ( Chr: 3 )
    CITATIONS (33)