header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-030131-8714
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.
Please check the highlighted fields and try again.
Thank you for submitting comments. Your input has been emailed to ZFIN curators who may contact you if additional information is required.
Oops. Something went wrong. Please try again later.
Gene Name: ATP-binding cassette, sub-family F (GCN20), member 2a
Gene Symbol: abcf2a    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: abcf2, wu:fb04f06, wu:fc74f03, wu:fd58d07

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 2 Mapping Details/Browsers
Description: Predicted to have ATP binding activity. Is expressed in neuromast. Orthologous to human ABCF2 (ATP binding cassette subfamily F member 2).
Genome Resources: Alliance (1),  Gene:336770 (1),  Ensembl(GRCz11):ENSDARG00000038785 (2)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55716]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa39862 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-abcf2a
    		2
    CRISPR2-abcf2a
    		2
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH abcf2a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH abcf2a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Molecular Function ATPase activity (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003439 (1)
  • InterPro:IPR003593 (1)
  • InterPro:IPR017871 (1)
  • InterPro:IPR027417 (1)
  • InterPro:IPR032781 (1)
  • PROSITE:PS00211 (1)
  • PROSITE:PS50893 (1)
  • Pfam:PF00005 (1)
  • Pfam:PF12848 (1)
    • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA abcf2a-201 (1)    Ensembl 2412
    Select Tool
    Browsers: UCSC,  NCBI,  Ensembl,  ZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM abcf2a No data available
    MARKER RELATIONSHIPS
    abcf2a Contained in: [BAC] DKEY-270K22 (1) (order this)
    abcf2a Encodes: [EST] fb04f06, fc74f03, fd58d07
    [cDNA] MGC:55716 (1) (order this), MGC:77014 (1) (order this), MGC:192859 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_201315 (1) 2413 bp
    Select Tool
    Genomic GenBank:BX323804 (1) 121116 bp
    Select Tool
    Polypeptide UniProtKB:F1QZ64 (1) 613 aa
    Select Tool
    Sequence Clusters UniGene:104616 (1)
    Sequence Information (all 29)
    ORTHOLOGY for abcf2a ( Chr: 2 )
    CITATIONS (29)