ZFIN ID: ZDB-GENE-030131-8639
Gene Name: SAM domain, SH3 domain and nuclear localisation signals 1a
Gene Symbol: samsn1a    Nomenclature History

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Previous Names: samsn1, wu:fa92h05, wu:fq83f12

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 15 Mapping Details/Browsers
Description: Is expressed in blood; macrophage; and solid lens vesicle. Orthologous to human SAMSN1 (SAM domain, SH3 domain and nuclear localization signals 1).
Genome Resources: Alliance (1),  Gene:336695 (1),  Ensembl(GRCz11):ENSDARG00000054543 (2)
GENE EXPRESSION
All Expression Data: Fig. 3 from Covassin et al., 2006
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa2821 Point Mutation Unknown Premature Stop ENU
sa7235 Point Mutation Unknown Premature Stop ENU
sa17145 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa28476 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH samsn1a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH samsn1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY No data available
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR001452 SH3 domain
    Domain IPR001660 Sterile alpha motif domain
    Homologous_superfamily IPR013761 Sterile alpha motif/pointed domain superfamily
    Family IPR021090 SAM/SH3 domain-containing
    Homologous_superfamily IPR036028 SH3-like domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA samsn1a-201 (1)    Ensembl 2599
    samsn1a-202 (1)    Ensembl 1617
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM samsn1a No data available
    MARKER RELATIONSHIPS
    samsn1a Contained in: [BAC] CH211-149M17 (1)
    samsn1a Encodes: [EST] fa92h05, faa30e11, fq83f12 (1)
    [cDNA] MGC:193919 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001128669 (1) 2078 bp
    Genomic GenBank:BX324227 (1) 129726 bp
    Select Tool
    Polypeptide UniProtKB:B3DH22 (1) 621 aa
    Sequence Information (all 31)
    ORTHOLOGY for samsn1a ( Chr: 15 )
    CITATIONS (18)